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Navigating State Tax Withholding in Reciprocity Situations

Written by Greenshades Software | Apr 25, 2025 1:06:40 PM

When employees live in one state and work in another, employers must handle reciprocity agreements and tax withholding with care. Here’s how Greenshades helps employers manage these complex multi-state payroll situations. 

Understanding the Scenario 

Here is an example to understand the situation: 

✔ Employee lives in Indiana, works in Illinois 
✔ Under reciprocity, the employer typically withholds Indiana State Income Tax (SIT), not Illinois 
✔ But if the employer doesn’t have a tax account in Indiana, they may not be required to withhold Indiana SIT 

📌 In such cases, employers must determine whether to withhold Illinois tax and advise employees to make estimated payments to their home state (Indiana) 

Key Considerations 

 ✔ Reciprocity Agreements & Non-Resident Certificates 

  • Employers should confirm reciprocity agreements between states 
  • Employees may need to complete non-resident certificates to exempt work-state withholding 
  • If the employer lacks a tax account in the employee's home state, withholding may not be required 

 ✔ System Behavior in Greenshades 

  • Greenshades identifies the employee’s resident state and applies tax rules accordingly 
  • Reciprocity rules inform withholding, but the system cannot detect employer registration status 
  • If withholding isn’t required, mark the employee exempt from SIT in the system 
  • Greenshades still tracks subject wages to help employees calculate estimated payments 

📌 Best Practices for Multi-State Employers 

✔ Understand and review reciprocity agreements regularly 
✔ Determine if you have a tax account in the employee’s home state 
✔ Configure payroll settings to: 

  • Mark employees exempt from resident-state withholding if needed 
  • Continue tracking subject wages for tax reporting 
  • Keep documentation of non-resident certificates and tax decisions 

 📌 Stay Compliant with Greenshades 

Greenshades helps employers handle complex multi-state payroll scenarios by enabling flexible configuration and wage tracking. With proper setup, you can ensure tax withholding remains accurate—even across state lines. 

Do you have a similar payroll tax question? Reach out to our team for insights and best practices!